5.1.1.1.1. etfba.core.metabolite

Difine the Metabolite class.

5.1.1.1.1.1. Classes

Singleton	Make a singleton metaclass.
Metabolite	Metabolite instances created with identical IDs, names, and all other attributes

5.1.1.1.1.2. Module Contents

class etfba.core.metabolite.Singleton(name, bases, attrs)

Bases: type

Make a singleton metaclass.

_instances

__call__(*args, **kwargs)

Call self as a function.

class etfba.core.metabolite.Metabolite(metabid, name=None, compartment=None, *, is_h=False, is_h2o=False)

Metabolite instances created with identical IDs, names, and all other attributes are treated as a singular instance.

kms

Key is the reaction ID where the metabolite is involved, value is the corresponding Km value.

Type:

PrettyDict

km

Km value of the metabolite in the host reaction.

Type:

positive float

coes

Key is the reaction ID where the metabolite is involved, value is the corresponding stoichiometric coefficient in the reaction. Negative for substrates and positive for products.

Type:

PrettyDict

coe

Stoichiometric coefficient of the metabolite in the host reaction.

Type:

positive float

is_h

Indicates whether it is a proton.

Type:

bool

is_h2o

Indicates whether it is water.

Type:

bool

is_constrained_by_mass_balance

Indicates whether it appears in the mass balance constraints.

Type:

bool

host

The host reaction of the metabolite.

Type:

Reaction

role

Role played by the metabolite in the host reaction.

Type:

{‘substrate’, ‘product’}

metabid

name

compartment

is_h

is_h2o

kms

coes

is_constrained_by_mass_balance = False

host = None

role = None

property km

property coe

__repr__()

Return repr(self).