Documentation for ETFBA
===================================

ETFBA is a Python package that extends metabolic flux balance analysis (FBA) by incorporating constraints on enzyme protein allocation and thermodynamics. ETFBA is capabable of:

- Growth simulation and metabolic flux estimation
- Variability analysis of flux, enzyme allocation and reaction energetics

with the above constraints separately or together.

.. toctree::
   :numbered:
   :maxdepth: 2
   :caption: Contents:
   
   installation
   building_model
   constraint_based_flux_analysis
   variability_analysis
   API </autoapi/etfba/index.rst>

Indices and tables
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* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`